PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Zmw_sc03780.1.g00010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Chloridoideae; Zoysieae; Zoysiinae; Zoysia
Family HSF
Protein Properties Length: 372aa    MW: 40441.3 Da    PI: 10.1789
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Zmw_sc03780.1.g00010.1genomeZGD-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind89.73.6e-28211342103
                                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT........ CS
                  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks........ 74 
                                   F+ k++++++d++++ +++w   +n+f+v+d+  f++ +Lp+yFkh+nfaSFvRQLn+Y     +  +++ +s        
  Zmw_sc03780.1.g00010.1.am.mk  21 FVAKTFHMVSDPATDAVVRWGLASNTFLVVDPAAFSDYLLPSYFKHRNFASFVRQLNTYVIFDASPARATFSSerscralg 101
                                   9********************999***********************************8666665555544457787777 PP

                                   ....XTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                  HSF_DNA-bind  75 ....kekiweFkhksFkkgkkellekikrkkse 103
                                       + + weF+h+sF  g+++ll  i rkk++
  Zmw_sc03780.1.g00010.1.am.mk 102 frkvDADRWEFAHESFLSGQTQLLPLITRKKKN 134
                                   665449************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.6E-3012125IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-3517131IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.3E-2518131IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004474.3E-2421131IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-112144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-115971IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.1E-117284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGSECKLQLH AEQQVGAIAP FVAKTFHMVS DPATDAVVRW GLASNTFLVV DPAAFSDYLL  60
PSYFKHRNFA SFVRQLNTYV IFDASPARAT FSSERSCRAL GFRKVDADRW EFAHESFLSG  120
QTQLLPLITR KKKNKPGGGG RELSDEGEEV RGTIRAVQRL REEQRGMDEE LQAMDRRLQA  180
AESRPGQMMA FLAKLADEPG VVLRAMLAKK EELAAAGGNG ASPPALEAPG KRRRISGAET  240
GRGDLGGVAD QGMGAVQFPF SALGQPRCLS RFASEPAPPR LCLIHAVPCC QCVLPQSLPC  300
MRDNRKSGPP LSGGSGTSGC MRRDPVARAR HRITGAGKKF GLPCTNRSPL ATAHLYHFRS  360
HRPLRPFTPG SC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5v_D2e-191813126129Heat shock factor protein 1
5d5v_B2e-191813126129Heat shock factor protein 1
5d5u_B2e-191813126129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230234KRRRI
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456302.11e-119hypothetical protein SORBIDRAFT_03g033750
SwissprotQ942D61e-116HFC1B_ORYSJ; Heat stress transcription factor C-1b
TrEMBLC5XJ361e-119C5XJ36_SORBI; Putative uncharacterized protein Sb03g033750
STRINGSb03g033750.11e-118(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP112983141